rs31480101 SNP Detail

Summary

• ID
  rs31480101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169776491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGGACG GTTGGGACCC
  CCTGCCCTGG TGCTTGTCTG TGAACACACC AAGACCTCCC TGCCTTCTAC AGCATCTGGT
  TTTATTCATT TCACCCACAG TCTGCCTCAT CCCTTTTTAA GACTGCTACC TTTAGTGTAT
  TTTATGGAAA TGCCATCATT CTTTGCGCAA TACCCTAGAG ACTGGATAAA CATGCTTACA
  Y
  TCTTTATGTT CTCCTGCTGC TGCCGGACAA TGATGCGACA ATGAACGTTG TTACAGTGGT
  CTGAAATCCC TGGCCTGCAA TTTCAAGGCC CAAACAGCTT AGGAAACTGA ACGTCTTTTC
  AAAATATTTA GCATACTCCT TGGCACTAAG CCTATCCAAG CTGGGAGGAG GCTGTTTATA
  GTTCTTATGC TGCTTTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49743328	NES13034411	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31480101					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743328	NES13034411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169776491 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	618 bp downstream
Rr422992	regulatory region 422992	1039 bp distal
Rr422993	regulatory region 422993	1887 bp proximal