rs31480100 SNP Detail

Summary

• ID
  rs31480100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169776526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGAAC ACACCAAGAC
  CTCCCTGCCT TCTACAGCAT CTGGTTTTAT TCATTTCACC CACAGTCTGC CTCATCCCTT
  TTTAAGACTG CTACCTTTAG TGTATTTTAT GGAAATGCCA TCATTCTTTG CGCAATACCC
  TAGAGACTGG ATAAACATGC TTACATTCTT TATGTTCTCC TGCTGCTGCC GGACAATGAT
  R
  CGACAATGAA CGTTGTTACA GTGGTCTGAA ATCCCTGGCC TGCAATTTCA AGGCCCAAAC
  AGCTTAGGAA ACTGAACGTC TTTTCAAAAT ATTTAGCATA CTCCTTGGCA CTAAGCCTAT
  CCAAGCTGGG AGGAGGCTGT TTATAGTTCT TATGCTGCTT TAATGTGAAT TCGTGCGTCT
  TTTTTGCTGA CATGCAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49743327	NES13034412	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31480100					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743327	NES13034412	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169776526 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	583 bp downstream
Rr422992	regulatory region 422992	1074 bp distal
Rr422993	regulatory region 422993	1852 bp proximal