rs31480097 SNP Detail

Summary

• ID
  rs31480097
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169776775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCCCAA ACAGCTTAGG
  AAACTGAACG TCTTTTCAAA ATATTTAGCA TACTCCTTGG CACTAAGCCT ATCCAAGCTG
  GGAGGAGGCT GTTTATAGTT CTTATGCTGC TTTAATGTGA ATTCGTGCGT CTTTTTTGCT
  GACATGCAAC TGGCTTTGAT TATAGGTTGT TGCCCCAACT CCCTCTAGGG CTGTTACCAA
  M
  CATACTGTAT TGTGTGCACC AGCTTATCTT TCCAAAGAAC AAGCAACTTT CATTTTCAAA
  GCATATTTAG CACCAAGAGT TTCCAACAGG TGACAATAAC CCTGTCACAG TGTATGTATT
  CGAGACCTAT CTTTAGGGCA AATTGAGAAA CGCTGACTTG CTAAAGGCAC GTGTGCTTGA
  AACTTGTGAT AGATGCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49743324	NES13034390	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31480097					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743324	NES13034390	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169776775 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	334 bp downstream
Rr422992	regulatory region 422992	1323 bp distal
Rr422993	regulatory region 422993	1603 bp proximal