rs31480096 SNP Detail

Summary

• ID
  rs31480096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169776797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAACGTC TTTTCAAAAT
  ATTTAGCATA CTCCTTGGCA CTAAGCCTAT CCAAGCTGGG AGGAGGCTGT TTATAGTTCT
  TATGCTGCTT TAATGTGAAT TCGTGCGTCT TTTTTGCTGA CATGCAACTG GCTTTGATTA
  TAGGTTGTTG CCCCAACTCC CTCTAGGGCT GTTACCAACC ATACTGTATT GTGTGCACCA
  R
  CTTATCTTTC CAAAGAACAA GCAACTTTCA TTTTCAAAGC ATATTTAGCA CCAAGAGTTT
  CCAACAGGTG ACAATAACCC TGTCACAGTG TATGTATTCG AGACCTATCT TTAGGGCAAA
  TTGAGAAACG CTGACTTGCT AAAGGCACGT GTGCTTGAAA CTTGTGATAG ATGCTGTCAA
  TGTGTTCTTC AAGAGTAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49743323	NES13034392	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31480096					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743323	NES13034392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169776797 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	312 bp downstream
Rr422992	regulatory region 422992	1345 bp distal
Rr422993	regulatory region 422993	1581 bp proximal