rs31480094 SNP Detail

Summary

• ID
  rs31480094
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169776992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGCTTA TCTTTCCAAA
  GAACAAGCAA CTTTCATTTT CAAAGCATAT TTAGCACCAA GAGTTTCCAA CAGGTGACAA
  TAACCCTGTC ACAGTGTATG TATTCGAGAC CTATCTTTAG GGCAAATTGA GAAACGCTGA
  CTTGCTAAAG GCACGTGTGC TTGAAACTTG TGATAGATGC TGTCAATGTG TTCTTCAAGA
  R
  TAACGACAGT CTCAGTAAAC GCTAGCTTGG CATTCTGAAC AGAATTCCAA ATTAAGATAC
  AGTGTAGCTT TTTATAAATG TGGCATAATA AAAATTAACT GAGTCTAAAA CCAAGATAGC
  ATGATAATTT TATTCAAATA GATGCTTGTT CAATCAACTG TTCATACATT CATCAAGAGC
  CCAGGAAATG GCAAGCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49743320	NES13034398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31480094					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743320	NES13034398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169776992 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	117 bp downstream
Rr422992	regulatory region 422992	1540 bp distal
Rr422993	regulatory region 422993	1386 bp proximal