rs31479616 SNP Detail

Summary

• ID
  rs31479616
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27282016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGCAGA TGTGGCAGTG
  CATGCTATAA TTTCAATGCT GAGGAGGATC CCTGAGGCTT GCTGGTAAGC CAGTCCAGCT
  GAATTGCTGA GCTCCAAGTT CACTGGGAGG CCTTATCTTT AAAAACTAGG TAAAGAGCAA
  TAGGGAAAAC ATCCAGTGTT AGTTGACTTC TGACCTCCTC ACACACACTT ACAGGAGCAT
  K
  AAGCAACACA CATGCATAAC ACACACACAC ACACATGTGT GCACTCACAT ACCCCTCCAC
  CCACACACTC CCATACAGTA TGTATTTTAC TATTTTCATC ACAGAAAAAA AAAAATTGAG
  TCATCCACAG GCAGTCAGGC AGCTAAGTAG ACACATAGGT GGTGTGTGGG ACTGACTCCG
  GGCTAGAAGC TTTACAGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45538787	mCV22996828	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	T
ss134703020	ENSMUSSNP2343158	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31479616					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27282016 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			within coordinates
Rr574373	regulatory region 574373			1214 bp proximal
Rr574374	regulatory region 574374			1237 bp proximal
Tssr28616	transcription start site region 28616			565 bp downstream