rs31479516 SNP Detail

Summary

• ID
  rs31479516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115216612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCAGGCCT CCCCAGCATC
  AACTCTCTGG AGTCTATTTA CAACTTCTGT GACAAGCCGT GGGTGGTAAG CATGTCCCCA
  GAGTACCTCC AGCACTCCAA TAGTAGCACG GACTGAGAAG ATCCGAGAGG CTTGTCAGCT
  GGGAGTCTGG ATGGGGCAGG CCATCACAGT AGCGTATTAC CAGATGTCAT GGACTGTGTG
  R
  TTTTGCTGCA GAGCAGACCT TTGACTTTTC TACCATGCTG TGCAGAAATC CTGTGATGAA
  AACCCTTTAT GTATATAGGT CTTTCCTTGA TCAGGAGCTA CAGTTGTAAC ACTGCCTGCC
  TCTTAAAATG GGTAAACTAT TGGAAAGGCC TAACACCAGT AGAGAAATTC AACTCATGTT
  AGAGATAGTT CTACCTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056106	NES11884935	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31479516					SNP	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056106	NES11884935	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115216612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			498 bp distal
Rr636940	regulatory region 636940			784 bp proximal
Rr636941	regulatory region 636941			1565 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			673 bp downstream