rs31479444 SNP Detail

Summary

• ID
  rs31479444
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132798574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCCAGTT GATTCAATAA ATATTTTTTA AAAACACCTG
  TGAAATGCTA CTTGCCAGGG AAATTCCTGC ATTCCCCCTC ACATTCCCCC TTCATAAACT
  W
  CTGCTCTCAT AAAAGCTATA CACTAGTGAG ATTAATAATT AAAGACAAAT GAAAGAGTAG
  AAAGTGAATG TTGCAGGTCA GAGCACTGTA CACATCCCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45537947	mCV25027933	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	A
ss135916555	ENSMUSSNP5720933	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31479444					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132798574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13847	CpG island 13847	491 bp distal
Gstcd	glutathione S-transferase, C-terminal domain containing	780 bp upstream
Ints12	integrator complex subunit 12	Intron
Rr398028	regulatory region 398028	1618 bp downstream
Rr398029	regulatory region 398029	755 bp downstream
Rr398030	regulatory region 398030	213 bp upstream
Rr585500	regulatory region 585500	999 bp distal
Rr585501	regulatory region 585501	963 bp distal
Rr585502	regulatory region 585502	791 bp distal
Rr585503	regulatory region 585503	290 bp distal
Rr585504	regulatory region 585504	80 bp proximal
Rr585505	regulatory region 585505	1548 bp proximal
Tssr31768	transcription start site region 31768	971 bp downstream
Tssr31769	transcription start site region 31769	940 bp downstream
Tssr31770	transcription start site region 31770	906 bp downstream
Tssr31771	transcription start site region 31771	860 bp downstream
Tssr31772	transcription start site region 31772	202 bp downstream
Tssr35744	transcription start site region 35744	1051 bp upstream
Tssr35745	transcription start site region 35745	1030 bp upstream
Tssr35746	transcription start site region 35746	966 bp upstream
Tssr35747	transcription start site region 35747	774 bp upstream
Tssr35748	transcription start site region 35748	759 bp upstream
Tssr35749	transcription start site region 35749	419 bp upstream