rs31479223 SNP Detail

Summary

• ID
  rs31479223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:169777159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGATAGA TGCTGTCAAT
  GTGTTCTTCA AGAGTAACGA CAGTCTCAGT AAACGCTAGC TTGGCATTCT GAACAGAATT
  CCAAATTAAG ATACAGTGTA GCTTTTTATA AATGTGGCAT AATAAAAATT AACTGAGTCT
  AAAACCAAGA TAGCATGATA ATTTTATTCA AATAGATGCT TGTTCAATCA ACTGTTCATA
  Y
  ATTCATCAAG AGCCCAGGAA ATGGCAAGCA CTGGTCAAAC ACTAGAAATA TAGCCAGAAA
  CAACCATGGA AGGTCTTGGC CCTGATCCTT TGGAAAAGTA AAGGACAATA AACATGAGAA
  ATGAGCACAA GTGTTAGATA AATAAATGAT TTTTAGGCAA AAGCTTCATT CTTTATTATA
  TAGATAATAA TATCTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49743319	NES13034399	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31479223					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743319	NES13034399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169777159 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	mRNA-UTR
Rr422992	regulatory region 422992	1707 bp distal
Rr422993	regulatory region 422993	1219 bp proximal