rs31479222 SNP Detail

Summary

• ID
  rs31479222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:169777483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAAGTG TTAGATAAAT
  AAATGATTTT TAGGCAAAAG CTTCATTCTT TATTATATAG ATAATAATAT CTCTTCTTAC
  CAAAGGTGAA AAATCAAACA AGAAATAGTA AGAGACATAA ATACACAGCT TGACAGAAAA
  ATAGGTAATT TTTTTTTAAA GCACCCTCTA TCAATACAAG GAAGACAAGT TACTTAGCGC
  Y
  GGTATACGTT TCTGAGAGCG GCAGCTTCAA ATGTGGCTAG GAGCCTACAG AAGCAATGAA
  GCTATGCACT CGGGGCTCTT AAGTGCTGAG CCATCTCTTC AGACCTCAAA TAAATATTTT
  GGTTTTTTTT TTTACAAAGT AAATAAGGAT GATAGAACCC GAGGGATATG ATGAAATTTT
  AGATTAAATA ACTATCGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49743318	NES13034400	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31479222					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743318	NES13034400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169777483 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	mRNA-UTR
Rr422993	regulatory region 422993	895 bp proximal