rs31479221 SNP Detail

Summary

• ID
  rs31479221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:169777717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTAGGAG CCTACAGAAG
  CAATGAAGCT ATGCACTCGG GGCTCTTAAG TGCTGAGCCA TCTCTTCAGA CCTCAAATAA
  ATATTTTGGT TTTTTTTTTT ACAAAGTAAA TAAGGATGAT AGAACCCGAG GGATATGATG
  AAATTTTAGA TTAAATAACT ATCGAAGACC TTATTGAGGA CTGAAGAAAA CAAAACTGGA
  R
  CAAAACAAAC CAACCGAACA AAAGCCTCAG TTGACAAGTA CCACAGCAGC ATTCCAGCAG
  CATTCCAGCA GCATTCCAGC CTAGGGAATC AACTACAGAA AGAAGATGAG CCCCAAGGCC
  CTGAATTCAA TACGCCCAAG CATGCAAAAT AAATACATGA AAATAAATTA AGAATAACGT
  GAACCAAAAT TTTAAAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss49743317	NES13034402	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31479221					SNP	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743317	NES13034402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169777717 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	mRNA-UTR
Rr422993	regulatory region 422993	661 bp proximal