rs31478767 SNP Detail

Summary

• ID
  rs31478767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89157333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG TCACCGACCC TTGCTTCTTC
  R
  CTCTGGCAAC CTTGTTTCCC TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45537549	mCV25256588	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss46749239	NES10738946	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G		G	G	G		G
ss135474305	ENSMUSSNP4201122	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320836910	CHEV_3_89053948	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31478767					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749239	NES10738946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89157333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	1413 bp proximal
Krtcap2	keratinocyte associated protein 2	297 bp downstream
Rr367466	regulatory region 367466	1269 bp upstream
Rr580001	regulatory region 580001	227 bp proximal
Rr580002	regulatory region 580002	308 bp proximal
Rr580003	regulatory region 580003	525 bp proximal
Rr580004	regulatory region 580004	569 bp proximal
Rr580005	regulatory region 580005	1439 bp proximal