rs31478728 SNP Detail

Summary

• ID
  rs31478728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115215635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACTGAGG AAAGCGCTTT
  AACCCTCACT ACTAGAGCCA ATCTCTGAGT TGGGTTGGGT TGGATCTGTA GGTGGGGATT
  GGATGGGAGC CTGGGCAGAG GACCAGGTAG GTCATTGTAC ATGGTGTCAA ATGCTGAGCT
  GCAGAGCCTT GGGGGCAGAT GCTGCCTCAA ACTGCCTCTC TGGGAAGGTC TCTGACACTA
  R
  GGCATGAAGA CAGGCAACCT AGTCTTCTAA AGCAGCTATA GCTAGGAGCT TTGCTGGCTA
  GAGGTGAAAC CAGGAGAGCT TTCCCATGCA TGGGAACATT CCGTCCTCTC AGTGTTTCCT
  GCAGCCCCGT TGCTCAACCT CAGTTCTGCG AAAAATATTT GCACCCCTCC CTAGCGTCCG
  TTTTGGAAGA ATAACATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056098	NES11884931	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31478728					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056098	NES11884931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115215635 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			within coordinates
Rr636940	regulatory region 636940			1761 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			293 bp upstream