rs31478214 SNP Detail

Summary

• ID
  rs31478214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90565398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTTTGGGCAG AAGACATGGC TCCTGCCTTC AGTGATACCT TGCTTGAATA
  Y
  CGGGGGGAAT ACCGGCCTTG AATCCAAAGT GCCAGCCGGT GGCTCATGCC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45538134	mCV24984331	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135478338	ENSMUSSNP1109971	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31478214					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90565398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57853	predicted gene, 57853			mRNA-UTR
				Noncoding-Transcript-Variant
S100a7a	S100 calcium binding protein A7A			mRNA-UTR
Tssr946	transcription start site region 946			1859 bp upstream
Tssr30264	transcription start site region 30264			1560 bp upstream
Tssr34247	transcription start site region 34247			1332 bp downstream
Tssr34248	transcription start site region 34248			1350 bp downstream