rs31478207 SNP Detail

Summary

• ID
  rs31478207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129051365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTACAA ACCATTAAGG TGGGTTAAAT GGCTGTTTTC
  ATCCCTCTGT CCCCTTTAAT AATATAAGGG ATATTGAGAA AGGTTGGGGT TTTTCCCCCC
  R
  AAAAGGCATG ATATAATTAT ATCTCAAATA AGCAAACACC AGATGACACA AGGTGAAGAT
  TTATGAAGAG TTTCAGTAGC TGATAAAGAC TTCTGCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45536784	mCV23445915	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135885296	ENSMUSSNP3027477	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A		G
ss320961808	CHEV_3_128960634	CHEVERUD	SCREENING_POP	f	SNP					G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31478207					SNP	G	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129051365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13813	CpG island 13813	1019 bp distal
Gm65501	predicted gene, 65501	within coordinates
Rr584978	regulatory region 584978	569 bp distal
Rr584979	regulatory region 584979	658 bp distal
Rr584980	regulatory region 584980	950 bp proximal
Rr584981	regulatory region 584981	1010 bp proximal