rs31478144 SNP Detail

Summary

• ID
  rs31478144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102059787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTA TCCTGCCATC TCTGTCTATC
  Y
  TCCCCTCCAA CAGCACAACC AAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45537072	mCV23804443	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135554490	ENSMUSSNP6799161	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C		T
ss320854663	CHEV_3_101956394	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31478144					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102059787 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582192	regulatory region 582192	within coordinates
Rr582193	regulatory region 582193	1684 bp proximal
Vangl1	VANGL planar cell polarity 1	1112 bp downstream