rs31476540 SNP Detail

Summary

• ID
  rs31476540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38334040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT GAGTTCCAGG ACAGCCAGAG
  Y
  TATACAGAGA AACCCTGTCT TGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45538018	mCV24343963	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss134829251	ENSMUSSNP2435686	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320717642	CHEV_3_38178813	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31476540					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38334040 () rs orientation: forward

Symbol	Name	Function Class
Rr575652	regulatory region 575652	130 bp proximal
Rr575653	regulatory region 575653	1760 bp proximal