rs3147598 SNP Detail

Summary

• ID
  rs3147598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50789724 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCACC CTGAGCATGC TTGCAGTGCG
  Y
  ACAGAGGCAA GCAATGCCGA CTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45901558	mCV22335782	ABI	CRAMUS_MOUSE	r	SNP	G	G	A						A
ss47875324	NES11685675	PERLEGEN	MM_PANEL2	r	SNP				A	A	G	A	G	A	A	G	G	A	G	A
ss133184950	ENSMUSSNP182129	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3147598					SNP	C	C	T	T	T	C	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47875324	NES11685675	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50789724 () rs orientation: reverse

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr1255	regulatory region 1255	923 bp distal
Rr630076	regulatory region 630076	within coordinates