rs31475871 SNP Detail

Summary

• ID
  rs31475871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137573089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA TGAAAGAACT TCCTGCCTTA
  Y
  AGCTGCTTTA ACCCAAAGAG CTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45537138	mCV24806824	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135944563	ENSMUSSNP1381514	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320976923	CHEV_3_137530292	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31475871					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137573089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	1500 bp distal
Cpgi13867	CpG island 13867	23 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	mRNA-UTR
H2az1	H2A.Z variant histone 1	406 bp downstream
Rr398061	regulatory region 398061	1323 bp downstream
Rr586004	regulatory region 586004	1556 bp distal
Rr586005	regulatory region 586005	958 bp distal
Rr586006	regulatory region 586006	within coordinates
Rr586007	regulatory region 586007	427 bp proximal
Tssr31916	transcription start site region 31916	1457 bp downstream
Tssr31917	transcription start site region 31917	1390 bp downstream
Tssr31918	transcription start site region 31918	430 bp upstream
Tssr31919	transcription start site region 31919	479 bp upstream
Tssr31920	transcription start site region 31920	531 bp upstream
Tssr31921	transcription start site region 31921	550 bp upstream
Tssr31922	transcription start site region 31922	630 bp upstream
Tssr31923	transcription start site region 31923	734 bp upstream
Tssr31924	transcription start site region 31924	749 bp upstream
Tssr31925	transcription start site region 31925	793 bp upstream