rs3147539 SNP Detail

Summary

• ID
  rs3147539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89011109 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTGCT TGCCTATGTC AGTAAAGAGT
  R
  AGTTGTAGGG TCTCAGTTTA ACAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45983525	mCV23949598	ABI	CRAMUS_MOUSE	r	SNP		T	C					C		T
ss51760894	NES14794792	PERLEGEN	MM_PANEL2	r	SNP	T		C	C	C	C	T		C	T	T	C		C	T	T	C		C
ss133368709	ENSMUSSNP5796746	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C							T
ss321851078	CHEV_6_88984121	CHEVERUD	SCREENING_POP	r	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3147539					SNP	A	A	G	G	G	G	A	G	G	A	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760894	NES14794792	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89011109 () rs orientation: reverse

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	549 bp proximal
Rr634069	regulatory region 634069	16 bp distal
Rr634070	regulatory region 634070	917 bp proximal