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rs3147536 SNP Detail
Summary
  • ID
    rs3147536
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:89011617 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          GCCTC CCCAGGTCTG TATGCAAGCA
    R
    AGAGCTTCAG CCCACAGGGG CCACT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
CZECHII/EiJ
DBA/2J
LG/J
SM/J
ss8635693 WI_WGS_6_89905774 WI MOUSE r SNP T C
ss45952084 mCV23949608 ABI CRAMUS_MOUSE r SNP C T T C
ss133368721 ENSMUSSNP3939288 ENSEMBL ENSEMBL_Sanger r SNP C T C
ss321851082 CHEV_6_88984629 CHEVERUD SCREENING_POP r SNP T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
CZECHII/EiJ
DBA/2J
LG/J
SM/J
rs3147536 SNP G A A G G A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89011617 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm66902 predicted gene, 66902 within coordinates
Rr1306 regulatory region 1306 41 bp proximal
Rr634069 regulatory region 634069 524 bp distal
Rr634070 regulatory region 634070 409 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory