rs3147535 SNP Detail

Summary

• ID
  rs3147535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89011869 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAAAG AGCCTCAGCA AAGATCTCAG
  Y
  GCTGGCTCTG TTTCTGACCC CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8649806	WI_WGS_6_89906026	WI	MOUSE	r	SNP			A	G
ss45959709	mCV23949609	ABI	CRAMUS_MOUSE	r	SNP	G	A	A
ss321851083	CHEV_6_88984881	CHEVERUD	SCREENING_POP	r	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs3147535					SNP	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89011869 () rs orientation: reverse

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	within coordinates
Rr634069	regulatory region 634069	776 bp distal
Rr634070	regulatory region 634070	157 bp proximal