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rs3147534 SNP Detail
Summary
  • ID
    rs3147534
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr6:89012222 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          TCCTC TTCTCCCTCC CTTCCTCCCT
    S
    CCCTCCTCCC TCCTGTTCCC AAGCA                                      
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321851085 CHEV_6_88985234 CHEVERUD SCREENING_POP r SNP C G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs3147534 SNP G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89012222 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm66902 predicted gene, 66902 within coordinates
Rr1306 regulatory region 1306 within coordinates
Rr634069 regulatory region 634069 1129 bp distal
Rr634070 regulatory region 634070 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory