rs31474939 SNP Detail

Summary

• ID
  rs31474939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26691794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCTGTC TTCATTAATT
  TTAGAGTATT AAAGGAAACT CACACATAGC AGGTGCATTC AGAGAGAAGG CTGGGGAGGT
  GCCGTAGCTC CCCGATGGTG GGCCGAGCCT GGAGGCACGT GGTCCGCTAA ATGGGCGGGG
  CCACGTGGCT GGTCGTTTTT TTTTTTTTTT TTTTTTTTTT ACTTCTAAGA GCTCTCTGAA
  R
  CTCCACAGCA GGTTGGCCTG GGATTGGGAC CGTTGGCACG ACAGATGCTG TAGGTGGTAG
  TCACTCGGCT CCTCTGACCC TAAACCACAC AGGTAGGAAG AGGCTGCTTT ACCCTAAGAA
  CAAAGCAGTT GGCAGGTTTG TTGTAGAAAA AAGGGGGGAT GTCGGGGAAG CTTGAGTAGC
  GACAAGAAGT GAGATCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45536750	mCV24231327	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss134696928	ENSMUSSNP79713	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320687942	CHEV_3_26536567	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs31474939					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26691794 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	91 bp upstream
Gm65438	predicted gene, 65438	1163 bp downstream
Rr574324	regulatory region 574324	1568 bp proximal
Rr574325	regulatory region 574325	1802 bp proximal
Spata16	spermatogenesis associated 16	mRNA-UTR
Tssr28597	transcription start site region 28597	8 bp downstream
Tssr28598	transcription start site region 28598	1 bp upstream