rs31473164 SNP Detail

Summary

• ID
  rs31473164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115217743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACAAGGT CTGAGAGCTT
  CCAGTGTAGG AGGAAGAGGT GTGGACAAGG TCTGAGAGCT TCCAGTGTAG GAGGAAGAGG
  TGTGGACAAG GTCTGAGAGC TTCCAGTGTA GGAGGAAGAG GTGTGGACAA GGTCTGAGAG
  CTTCCTGAGC TCACTTGCAG CTTTTGCCTG TGTGTGGCCT GTGACATCTG GAATCCTACT
  K
  TTCTGCAAAG ACGGGCTAAA AGAGTGGTGT GACTTGAGTG CTGCCTATCT CAGAAAACAC
  AATGAGGTAT CTATCAAATA TTTTTCTGGG ATCTGCCCAT TTCTCCTCAG TTACGTGACC
  TTCCTCCTGA AATATGCTCT AACCCACCCC ATCCCCACTT CCTGTCATAA TTTGGTTCTC
  TCATAGCTAC ACAGGGTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056124	NES11884912	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31473164					SNP	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056124	NES11884912	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115217743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			1629 bp distal
Rr636940	regulatory region 636940			within coordinates
Rr636941	regulatory region 636941			434 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			1804 bp downstream