rs31472321 SNP Detail

Summary

• ID
  rs31472321
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115156954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAAAAGA GGCACAGTAA
  CACGCTAGTC TTCACATTGC TGCTACTCTA GTAGATTTTA CAATACAGAC AGATTCCTTA
  ATGTTGGGCC TAAAGGTCTG AGAGGTTCTA TGGACTTCTT TGTTTTCTGT GCGGTATGTT
  CTGAGCTACT CTGCATTCTC TGAAAGAGAA CACCTAGGCA GTTCCTACAT CAGTCTCCTT
  S
  GAAATGGGTT ACCAAGCATC TCTCTGAAAC ACAGTGAATA GTCTGTAAGT AGTTTAACTG
  CAAAGAAAGA CTGTCCTTGG GCACAGACTC TGTCTGAACA AGGCTTTGTG TATTCTGGGG
  ATGTCAGGAT CCTACCCAGT GAGGCAGGGT TTCCTCAGGC ATTCATTCAG CTTCTCTAAG
  AAAGGAGCTT TTCAGAGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48055472	NES11885431	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31472321					SNP	C	C	G	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48055472	NES11885431	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115156954 () rs orientation: forward

Symbol	Name	Function Class
Rr636932	regulatory region 636932	867 bp distal
Syn2	synapsin II	Intron