rs31472319 SNP Detail

Summary

• ID
  rs31472319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115156886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGCAGA AGCTGTTGTG
  CTTAGTTGTC ACATTCTCTG TTTCTTGCAT GGGCTCAGAG AACACTTTCT AGAAAAGAGG
  CACAGTAACA CGCTAGTCTT CACATTGCTG CTACTCTAGT AGATTTTACA ATACAGACAG
  ATTCCTTAAT GTTGGGCCTA AAGGTCTGAG AGGTTCTATG GACTTCTTTG TTTTCTGTGC
  K
  GTATGTTCTG AGCTACTCTG CATTCTCTGA AAGAGAACAC CTAGGCAGTT CCTACATCAG
  TCTCCTTCGA AATGGGTTAC CAAGCATCTC TCTGAAACAC AGTGAATAGT CTGTAAGTAG
  TTTAACTGCA AAGAAAGACT GTCCTTGGGC ACAGACTCTG TCTGAACAAG GCTTTGTGTA
  TTCTGGGGAT GTCAGGATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48055470	NES11885430	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31472319					SNP	G	G	T	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48055470	NES11885430	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115156886 () rs orientation: forward

Symbol	Name	Function Class
Rr636932	regulatory region 636932	799 bp distal
Syn2	synapsin II	Intron