rs31471251 SNP Detail

Summary

• ID
  rs31471251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90397408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGCTATG TAGCCCTAGC TGATTTGATA GTCCAGGCTC
  TGCTCAAAGT TCAAGCCATC CTTCTTGCCT TAGCCTACCA AATGCTGAAA CTACAGCATG
  Y
  ACCACCATGC ACTGCTGGGA TTATTATTAT TATTACTATT TTATTATTTT ACCTGTGCAT
  TCTGTAAAAT ATTGTTGACC AAGACAACTC GTCGCCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45536615	mCV23476859	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135476689	ENSMUSSNP1990283	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320837897	CHEV_3_90294023	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31471251					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90397408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	651 bp proximal
Ilf2	interleukin enhancer binding factor 2	1722 bp downstream
Rr397812	regulatory region 397812	897 bp upstream
Rr580375	regulatory region 580375	922 bp proximal
Rr580376	regulatory region 580376	937 bp proximal
Rr580377	regulatory region 580377	1049 bp proximal
Rr580378	regulatory region 580378	1373 bp proximal
Snapin	SNAP-associated protein	Intron
Tssr34231	transcription start site region 34231	944 bp upstream
Tssr34232	transcription start site region 34232	616 bp downstream
Tssr34233	transcription start site region 34233	681 bp downstream
Tssr34234	transcription start site region 34234	874 bp downstream