rs31470841 SNP Detail

Summary

• ID
  rs31470841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115154752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAGTGG TGGGAAAACT
  GGGCAAAGCT ACCGAAAGTT GTGTCGATTA GATGGTGGGA AGTTAGGATG CATCCATCTG
  GTGACTTCTA TTTTCTCTGT TTAGTAGGCG GGTGGGTCAA CACAGAGAAA GAGAAGGATG
  ATGAAGGGGA GCTATTTGAG GGAAAGGAAA GATTTGAAAT GATTATCTTT TGACCAGACA
  W
  ACTTGACTTG CTGTGTGTTG GGCCTTCGTG ATGTGACAGT CTGCTCTGTT ATGCTTCTTT
  TTTCTTCCTG GCATTTTAGC ATCTTGGAGA TGCAGAAGGT GAACAAATAC TCGAGCTGAC
  CAACATTTAT TTTAGTTTTC TAACAGATGA CAGAAGAGAA CGAAAGGAGA TTTAGATAAT
  TGAAATCCTA GATCACCGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48055452	NES11885452	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A		T
ss321915419	CHEV_6_115127809	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31470841					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48055452	NES11885452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115154752 () rs orientation: forward

Symbol	Name	Function Class
Rr636932	regulatory region 636932	1126 bp proximal
Syn2	synapsin II	Intron