rs31470159 SNP Detail

Summary

• ID
  rs31470159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115153968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGTGA GTAGGTAGGG
  GAGCAGGGCG GGGTGGGGGG AGGATGGTAT AGGAGACTTT TTGGGATAGC ATTTGAAATG
  TAAATGAAGA AAATATCTAA TAATTTTTTT TTTTTTAAAA ATCAGCCTGA GTGACTTTGC
  TAAGAATTTT ATGGATTCTA AGTGGAATGG GAAGCTGTGC AAGAGTCTTG ATAGAGTTTG
  Y
  TACCCTGGCC TAACCTGCTG GAGTGGACTC AGGGAGGGAG AGACTGGATG CTGATGCTGG
  AAAGTGGCTA TAAAGCTGCT GCAGATGCTC AGGTAGACTG AACTGTCAGG CAAAAGTGGG
  GCCAGAGAGA AGTGGCACAG TATAAGGAAT ACTTAATAAA TTAGACAGCC AGGGCTTGAT
  TGATTAGATG AGAGATGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48055440	NES11885458	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	T	T	T		C	T	T		C
ss321915408	CHEV_6_115127025	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31470159					SNP	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48055440	NES11885458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115153968 () rs orientation: forward

Symbol	Name	Function Class
Rr636931	regulatory region 636931	1867 bp distal
Rr636932	regulatory region 636932	1910 bp proximal
Syn2	synapsin II	Intron