rs31470146 SNP Detail

Summary

• ID
  rs31470146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170670995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA TACACAATTT ATGAAGATCA
  Y
  AAATACATAA TGAAATTAGA GACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45037087	mCV23198799	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss320113899	CHEV_1_172773557	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31470146					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170670995 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	1025 bp proximal
Rr423132	regulatory region 423132	1135 bp proximal
Rr423133	regulatory region 423133	1991 bp proximal
Tssr14927	transcription start site region 14927	1636 bp upstream