rs31463620 SNP Detail

Summary

• ID
  rs31463620
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115026379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGAAAG CTAGGGGGCG
  CCAGAGTCAG GGAAATGCCC TTTTTGCAGG TGGACCTGGA CTCTGAAAGA CCCTGGGGTG
  TGGTACTTCA AAGCAGAAGA TGTTCTGATC TCTTCCACGG TGGTTGATTC CCTTTTCCTC
  TTCTCAAACC AGGACAAGAA TGTTTTAGGC TCACAACTAT GTCTGGTGAG TTTCACGGAA
  S
  TAACCGACTC TGAGACTGTG TCCCCCGGGG TCCCTCACTC ACGTGTGAGT CCAAGCTCTT
  CAGCAGTTTA TCAAAGTTAC TGTTTAGCAT GATGGTAACA GTCCCCCGAT TCCAGAATCT
  TCTATTTCAG GGAAGTAGCT CTTGTGTGCG CGTCTCTGGA TTTGTTTGTG TGTCCTGATC
  TCAGGGAGCA GGAGCTCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48054560	NES11869338	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31463620					SNP	C	C	G	C	C	G	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054560	NES11869338	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115026379 () rs orientation: forward

Symbol	Name	Function Class
Rr636916	regulatory region 636916	64 bp distal
Rr636917	regulatory region 636917	176 bp distal