rs31463618 SNP Detail

Summary

• ID
  rs31463618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115026252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTTTC CGGCCTTTGT
  GACTATCATC TGTTTACTGC CCTTGGGCAC TGCTGGCAAG CCAGGAAATA CAGGGAGGGG
  ATTAAATGGT CAAATCCCAG CCTCTTAGAC CCTAGGACAA GGCTTGATGC AGGAAAGCTA
  GGGGGCGCCA GAGTCAGGGA AATGCCCTTT TTGCAGGTGG ACCTGGACTC TGAAAGACCC
  Y
  GGGGTGTGGT ACTTCAAAGC AGAAGATGTT CTGATCTCTT CCACGGTGGT TGATTCCCTT
  TTCCTCTTCT CAAACCAGGA CAAGAATGTT TTAGGCTCAC AACTATGTCT GGTGAGTTTC
  ACGGAACTAA CCGACTCTGA GACTGTGTCC CCCGGGGTCC CTCACTCACG TGTGAGTCCA
  AGCTCTTCAG CAGTTTATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48054558	NES11869336	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31463618					SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054558	NES11869336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115026252 () rs orientation: forward

Symbol	Name	Function Class
Rr636916	regulatory region 636916	within coordinates
Rr636917	regulatory region 636917	49 bp distal