rs3146358 SNP Detail

Summary

• ID
  rs3146358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36916537 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTTC AGGTCACTCA ACATTTCCAC
  Y
  TGGGGGTGGG AGCATCCACT TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5074969	WI_WGS_3_36742745	WI	MOUSE	r	SNP				G	A
ss45424989	mCV24767451	ABI	CRAMUS_MOUSE	r	SNP	G	G	G		A	G
ss134792454	ENSMUSSNP7071558	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G			G
ss320705822	CHEV_3_36761310	CHEVERUD	SCREENING_POP	r	SNP							G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3146358					SNP	C	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36916537 () rs orientation: reverse

Symbol	Name	Function Class
Bltp1	bridge-like lipid transfer protein family member 1	716 bp upstream
Cpgi13092	CpG island 13092	395 bp proximal
Rr575409	regulatory region 575409	773 bp distal
Rr575410	regulatory region 575410	228 bp proximal
Rr575411	regulatory region 575411	729 bp proximal
Tssr28876	transcription start site region 28876	377 bp downstream
Tssr28877	transcription start site region 28877	348 bp downstream
Tssr28878	transcription start site region 28878	714 bp upstream
Tssr28879	transcription start site region 28879	760 bp upstream
Tssr28880	transcription start site region 28880	778 bp upstream
Tssr28881	transcription start site region 28881	791 bp upstream