rs3146354 SNP Detail

Summary

• ID
  rs3146354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36917552 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCCAC CTTAACCTCC GACCTCCGAC
  Y
  TCCGACCCCC AGGCCCGCGC CACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45462875	mCV24767458	ABI	CRAMUS_MOUSE	r	SNP	A	A	G
ss320705829	CHEV_3_36762325	CHEVERUD	SCREENING_POP	r	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3146354					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36917552 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bltp1	bridge-like lipid transfer protein family member 1			Intron
				Noncoding-Transcript-Variant
Cpgi13092	CpG island 13092			within coordinates
Rr575409	regulatory region 575409			1788 bp distal
Rr575410	regulatory region 575410			287 bp distal
Rr575411	regulatory region 575411			within coordinates
Tssr28876	transcription start site region 28876			1392 bp downstream
Tssr28877	transcription start site region 28877			1363 bp downstream
Tssr28878	transcription start site region 28878			256 bp downstream
Tssr28879	transcription start site region 28879			239 bp downstream
Tssr28880	transcription start site region 28880			226 bp downstream
Tssr28881	transcription start site region 28881			213 bp downstream