rs3146350 SNP Detail

Summary

• ID
  rs3146350
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36918871 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAATA GAGCAAGCAA AAGAAAAGCA
  T
  ACTGGCACCC GGCGATGGTT GGTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134792479	ENSMUSSNP3586809	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A	A
ss320705836	CHEV_3_36763644	CHEVERUD	SCREENING_POP	r	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3146350					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36918871 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bltp1	bridge-like lipid transfer protein family member 1			Intron
				Noncoding-Transcript-Variant
Rr575410	regulatory region 575410			1606 bp distal
Rr575411	regulatory region 575411			652 bp distal
Tssr28878	transcription start site region 28878			1575 bp downstream
Tssr28879	transcription start site region 28879			1558 bp downstream
Tssr28880	transcription start site region 28880			1545 bp downstream
Tssr28881	transcription start site region 28881			1532 bp downstream