rs31461374 SNP Detail

Summary

• ID
  rs31461374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115015492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTCATGT TAAAGGTCTT TTTCAAGTCT GATAATAAAT
  AAATGTTCCA TAAAAGGAAA CATATTGTAT AAATATTCCC TCACATTTGC ATTCAATTTT
  R
  GAGTCAGAGA AGTCTTCTTG CCCCTTCAGG GATGGTGTCT TAGTCAGGGT TTCTATTCCT
  GCACAAACAT CATGACCAAG AAGCAAGTTG GGGAGGAAAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48054474	NES11869665	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31461374					SNP	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054474	NES11869665	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115015492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17868	CpG island 17868	486 bp distal
Gm68165	predicted gene, 68165	547 bp downstream
Rr399845	regulatory region 399845	431 bp downstream
Rr636913	regulatory region 636913	351 bp distal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog	655 bp upstream
Tssr62499	transcription start site region 62499	650 bp upstream
Tssr62500	transcription start site region 62500	659 bp downstream