rs31460552 SNP Detail

Summary

• ID
  rs31460552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115015409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCATCCA CCTGCCTCTG
  TCTCCAAAGG GCTAAGATGA AAGCATGAAC TACCTCATTC ACAACCTTGT GGAGCTATCA
  CCTCTAGTGC CAAGTTGTAG GAGCATTTGA AGATTTAGAA AAACAAAAGA AATGTAAAAC
  ATGCCGGCCC AGGGGATTGT GATTGCTAGA AACTGACTGT GGTTTCTTCA TGTTAAAGGT
  Y
  TTTTTCAAGT CTGATAATAA ATAAATGTTC CATAAAAGGA AACATATTGT ATAAATATTC
  CCTCACATTT GCATTCAATT TTAGAGTCAG AGAAGTCTTC TTGCCCCTTC AGGGATGGTG
  TCTTAGTCAG GGTTTCTATT CCTGCACAAA CATCATGACC AAGAAGCAAG TTGGGGAGGA
  AAGGGTTTAT TCAGCTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48054472	NES11869664	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31460552					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054472	NES11869664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115015409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17868	CpG island 17868	403 bp distal
Gm68165	predicted gene, 68165	630 bp downstream
Rr399845	regulatory region 399845	348 bp downstream
Rr636913	regulatory region 636913	268 bp distal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog	572 bp upstream
Tssr62499	transcription start site region 62499	567 bp upstream
Tssr62500	transcription start site region 62500	742 bp downstream