rs31460548 SNP Detail

Summary

• ID
  rs31460548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115014624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC GACTCACCTC CTGGTGGGCA
  Y
  TGGGTCCTGC CTGGCGATAC ACCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48054468	NES11869676	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31460548					SNP	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054468	NES11869676	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115014624 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17868	CpG island 17868			within coordinates
Gm68165	predicted gene, 68165			1415 bp downstream
Rr399845	regulatory region 399845			136 bp upstream
Rr636913	regulatory region 636913			203 bp proximal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr62499	transcription start site region 62499			161 bp downstream
Tssr62500	transcription start site region 62500			1527 bp downstream