rs31460546 SNP Detail

Summary

• ID
  rs31460546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115013578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCATCTAA TCTATTTCTG
  AGACAGGGTC TCTTACTGAC CTGGAGCTTG CCAAGTATGC CGGGAGCCAG GAAGCCCCAG
  GGATCCACCG GTTTCTGTCT CCCTAAAGCT GGGATTACAA GTGGGTACAC CACAATGCCT
  GACTGAAGGA TGATTGTAAA AAAAAAAATG TATAATTATG ATAATCTATA TGAAGTAACT
  R
  GACAGCTCAC AATTTCTCAT ATGCCCATGA TCCATACTTT CCCATTTGTT AGAGAAAATC
  GGTAGGATGT AGAAGAAATT CAAGAAACAC CAGGTGAATT TTAACTGGAA GAAAGACCTG
  GCCAGGAGCT AGACCCAGGA TGCCCTACTG TACAGTGACT GAGACTCCGT ACTCTGGAGT
  AACAAGCCTC AATCCTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48054466	NES11869710	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31460546					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054466	NES11869710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115013578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17868	CpG island 17868			710 bp proximal
Rr399845	regulatory region 399845			1182 bp upstream
Rr636913	regulatory region 636913			1249 bp proximal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog			Intron
				Noncoding-Transcript-Variant
Tssr62499	transcription start site region 62499			1207 bp downstream