rs31460544 SNP Detail

Summary

• ID
  rs31460544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115013254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTTTC CAGAGGAGGG
  GAGCCCATTC AGGCACTAAC GTCCTGGAAG AACACAACAG AATTGTTGGC ATGAATGCAG
  AGAATGAAAA AGAAGAGGAA ATAAGGGTCC TCTCTGGGAG AGATGTGTAG GTCAGCTCGG
  AGGAGAACCT CTTTGAAAAC CTACAAGCTG TCTATCGGGA GGTTCAGGAA TGCTGTTTCC
  Y
  AGGCTGGTCT TAAACCATCG GTGATATTAC TTAAGATTCG GAGGTAACAT GGATAGTTTC
  ATGTATGTAC AGATATATGA AGCCATGTTT GCAGGTCAGA GGGCGCGGAT TGTTGCTCCC
  ACGCTCCATC TAATCTATTT CTGAGACAGG GTCTCTTACT GACCTGGAGC TTGCCAAGTA
  TGCCGGGAGC CAGGAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48054464	NES11869723	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31460544					SNP	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054464	NES11869723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115013254 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17868	CpG island 17868			1034 bp proximal
Rr399845	regulatory region 399845			1506 bp upstream
Rr636913	regulatory region 636913			1573 bp proximal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog			Intron
				Noncoding-Transcript-Variant
Tssr62499	transcription start site region 62499			1531 bp downstream