rs31460366 SNP Detail

Summary

• ID
  rs31460366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126388948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTGAGG CTCAGCCTGG
  TTTGCATAGT GAGTTCCATG CCATTTAAGA GAGACACACT GAGACTATTC CAATCAAATA
  AAAATGTTCA AATTTAAGGA CATAAAAAAC AAAATTTGCT TTTAAAAACA AAAAGGAATC
  AAAGCTATAT AAAAACCACA GAGGAACTTC AATAAGCTTC CAAGGGTGTC CCACAATGAC
  R
  ACTGAACAGC AGAGGCCCCC AGGTAGGAAC AATACAAGAC AAAGCGGGAC GTGTGCTGAT
  CCCACGTGCT TGGCAACGTC AAAAATCAGC ACTAGGAATC TAGTGCGTGG GCAGAATATC
  AAATGATGTA AGTAAAATTG AAGGGAAAAT TATAGTAAAA CAGGCCAGTA AATGACATTT
  TCATGGGCAA AACAATGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45536499	mCV24012063	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss135836823	ENSMUSSNP623705	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320946571	CHEV_3_126298217	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31460366					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126388948 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	1003 bp upstream
Cpgi13785	CpG island 13785	753 bp proximal
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	849 bp upstream
Rr584646	regulatory region 584646	1162 bp proximal
Rr584647	regulatory region 584647	1587 bp proximal
Rr584648	regulatory region 584648	1699 bp proximal
Tssr31566	transcription start site region 31566	1027 bp upstream
Tssr31567	transcription start site region 31567	1053 bp upstream
Tssr31568	transcription start site region 31568	1109 bp upstream
Tssr31569	transcription start site region 31569	1514 bp upstream
Tssr31570	transcription start site region 31570	1662 bp upstream
Tssr31571	transcription start site region 31571	1694 bp upstream
Tssr31572	transcription start site region 31572	1803 bp upstream
Tssr31573	transcription start site region 31573	1939 bp upstream
Tssr31574	transcription start site region 31574	2000 bp upstream