rs31459712 SNP Detail

Summary

• ID
  rs31459712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115013101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCGTGGA AAACGGCTGT
  CACGTTAGTG AAACTCTTCC CTGTTCTGGA GCCAGGCGTG TTCCAGAACC CGCCCCCTCC
  CCCAGTCTGA TGCTGCTGTT AACAAAACAT ACTCATGCAG TACTAAATGA GATCAAGGCG
  ACTTTCCACA TTAAAGAACT TTCCAGAGGA GGGGAGCCCA TTCAGGCACT AACGTCCTGG
  R
  AGAACACAAC AGAATTGTTG GCATGAATGC AGAGAATGAA AAAGAAGAGG AAATAAGGGT
  CCTCTCTGGG AGAGATGTGT AGGTCAGCTC GGAGGAGAAC CTCTTTGAAA ACCTACAAGC
  TGTCTATCGG GAGGTTCAGG AATGCTGTTT CCCAGGCTGG TCTTAAACCA TCGGTGATAT
  TACTTAAGAT TCGGAGGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48054462	NES11869722	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31459712					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054462	NES11869722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115013101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17868	CpG island 17868			1187 bp proximal
Rr399845	regulatory region 399845			1659 bp upstream
Rr636913	regulatory region 636913			1726 bp proximal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog			Intron
				Noncoding-Transcript-Variant
Tssr62499	transcription start site region 62499			1684 bp downstream