rs31459234 SNP Detail

Summary

• ID
  rs31459234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95406603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCAGCTA TCCACACTGG
  CATATGATAC TGTATACACA CATTGTGCAA ATGTGTGTCC TTCCTCCCTA ACCCCTCCTC
  CTTTTCATCC TATCCCTGAC TCCCTCCCTT ATCCAGATTT TCCAGCCACT GCTGGAGTTG
  ACTTCCGCAA TCCTTACCGA ATAAATCTAG CACCCTTAGT CTTCCGCTCA CAGTAGCCAC
  R
  CTTCCTATCC GAAAAGAGCC TAGCGAACAG ATTCTCAACA GCAGGTAACA TTTTTAACTT
  CTGGATCTTT TAGCGTCTTG TTCCTACCAA TTAACCTTAT TTTAAGAAGA GAAAGGATAT
  AATGAATTGG GGATCAAATA ATTTAAGTTC CCTGAATAAC AACATAATCC TTAGTTTATT
  TTCTAGCTAA ATGTGTATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45536485	mCV24564027	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss46774844	NES10757813	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	G
ss135511870	ENSMUSSNP4058294	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31459234					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774844	NES10757813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95406603 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	mRNA-UTR
Rr580952	regulatory region 580952	724 bp distal
Rr580953	regulatory region 580953	26 bp distal
Rr580954	regulatory region 580954	349 bp proximal
Tssr30555	transcription start site region 30555	72 bp downstream
Tssr30556	transcription start site region 30556	63 bp downstream
Tssr30557	transcription start site region 30557	27 bp downstream
Tssr30558	transcription start site region 30558	3 bp downstream
Tssr30559	transcription start site region 30559	500 bp upstream
Tssr30560	transcription start site region 30560	564 bp upstream
Tssr30561	transcription start site region 30561	599 bp upstream