rs31457378 SNP Detail

Summary

• ID
  rs31457378
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114868935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCGTCAAA CAGGCGTCAG CTTCACATAC AGGTGACAAA
  CGCGATTTTG TTAGTGGGAA GGAGGGAGGG AAAGTCCTTC TGAGCATCCA CCAGGAAAAA
  W
  AAAAACCCTG CCAGTTTAGA CAGCAAGATA TAAACTCGCA AATATACAGT GACCTGTAAT
  GCACCCCAGT GGGGTTCCTT GTACAGCTTC TGGCCACGGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss48053222	NES11874249	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs31457378					SNP	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053222	NES11874249	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114868935 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	1859 bp upstream
Rr636858	regulatory region 636858	92 bp proximal
Rr636859	regulatory region 636859	1430 bp proximal
Vgll4	vestigial like family member 4	Intron