rs31457376 SNP Detail

Summary

• ID
  rs31457376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114868761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCTCCT AAAATTTATA
  ACAGGAATTA TAATTACTTT GAGTAAAAAC TCTCAACATT GTAAGTCCTA AGGGAACTAA
  TTCTTTCAAA CAGAGAAAGC CTTCTGGTGG GCAGTTACAC AGTGGCTTCT GAGGCCTGAC
  CAATCTTATT TCCACCAGTC ACAATTAAGA ATCATATTAG CATGAAGTCA ATTTCATCTG
  M
  GGCGCTGTGG TACCCAAGAA AAGCCACCTT TGTGACCACT CACTTCCCTT CATATCACCA
  CTGATGCACG GCTGGCCGTC AAACAGGCGT CAGCTTCACA TACAGGTGAC AAACGCGATT
  TTGTTAGTGG GAAGGAGGGA GGGAAAGTCC TTCTGAGCAT CCACCAGGAA AAATAAAAAC
  CCTGCCAGTT TAGACAGCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48053220	NES11874248	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31457376					SNP	C	A	C	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053220	NES11874248	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114868761 () rs orientation: forward

Symbol	Name	Function Class
Rr636858	regulatory region 636858	266 bp proximal
Rr636859	regulatory region 636859	1604 bp proximal
Vgll4	vestigial like family member 4	Intron