rs31456482 SNP Detail

Summary

• ID
  rs31456482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114905965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAGCAGG CTCTCCTGTT
  GACCTGTCCC TCCCAGAAGC TGTTGGTCCC AGGCAGTTGG CGGAGAATTT CCAGTCTTTT
  CTGGCTGCAC TAAGTGGGGT CACTGTCTCT TTACAGCTGT ACCCCTCAAG TATTGGCCTC
  CTATTCACAC CTCCTGTCTC TCTTTAGATC ACTTTCCCCA GAACCTAACA ACAACAACAC
  Y
  TGGCACTGTT AGGTAGCCCA GCTATTTTCT GAGAACAAAC TGGAACGGAG ACCTCTAAGT
  CTAATCTGGG TACTGAGGGA AGCAGGAGAG GCCACCAGGC CCCAGAGGCA GTGAGTGTTT
  CTGATGGAGT CCAGGACACT GAAAAGGAGC TACACCCTAC GGCTCCTGAC GCTTTAAACA
  GTTAGAAAGC AGAGATGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053522	NES11873173	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31456482					SNP	T	T	C	T	T	C	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053522	NES11873173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114905965 () rs orientation: forward

Symbol	Name	Function Class
Rr636877	regulatory region 636877	1945 bp distal
Rr636878	regulatory region 636878	1403 bp distal
Rr636879	regulatory region 636879	within coordinates
Rr636880	regulatory region 636880	354 bp distal
Rr636881	regulatory region 636881	532 bp proximal
Vgll4	vestigial like family member 4	Intron