rs31456480 SNP Detail

Summary

• ID
  rs31456480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114905825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACATCC CCCTTACATG
  TAAGCCTTCA GTATTCCTTT ACATAGAAGG GCCTGTCATC TTAGGTAGGC TTCCTAGCTC
  AGAGGCATCT AGAACTGATG CAAAACACAT ACACACACAC TTACTTCGTC TGGGAATTGG
  GCTTAGCAGG CTCTCCTGTT GACCTGTCCC TCCCAGAAGC TGTTGGTCCC AGGCAGTTGG
  Y
  GGAGAATTTC CAGTCTTTTC TGGCTGCACT AAGTGGGGTC ACTGTCTCTT TACAGCTGTA
  CCCCTCAAGT ATTGGCCTCC TATTCACACC TCCTGTCTCT CTTTAGATCA CTTTCCCCAG
  AACCTAACAA CAACAACACT TGGCACTGTT AGGTAGCCCA GCTATTTTCT GAGAACAAAC
  TGGAACGGAG ACCTCTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053520	NES11873171	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31456480					SNP	C	C	T	C	C	T	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053520	NES11873171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114905825 () rs orientation: forward

Symbol	Name	Function Class
Rr636877	regulatory region 636877	1805 bp distal
Rr636878	regulatory region 636878	1263 bp distal
Rr636879	regulatory region 636879	within coordinates
Rr636880	regulatory region 636880	214 bp distal
Rr636881	regulatory region 636881	672 bp proximal
Vgll4	vestigial like family member 4	Intron