rs31456478 SNP Detail

Summary

• ID
  rs31456478
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114904880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCTTAC CTTTCAACCC
  TGTCAGCTGT ATTCAGTACT GTAGAAGAGA AATAAGTATT TCTGTTGAAA ATATCGTTAA
  GCCAAATAAT GCCCAATAGT ATTCAAGTCT TCTCACAAAG CGAGCCCAGG TTTTCTGAGA
  GAGATGTGCC AGAGTCACCC TATAGCCACC CCTTCAGTGT TTTTACTGAT GCTGTGTTTA
  W
  ATGGACACTA ACATGGCCAC CAGAATTCCA TCTACAAGAC TGGTGTAGTT TGGGACCTGG
  GAGGCACCTC AGAGAATAAA GGTGCTTGCT GCCAAATCTG ACAACCTGAG TTCAACCCCT
  GGGACCCCAT GTGGTGGAAG GACAGACAGC ACCAACTCTG GTGAGCCGTG GGTAAATATG
  ATAGAAGTCA AAGTTTCTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053518	NES11873234	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	T	T	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31456478					SNP	A	A	T	A	A	T	T	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053518	NES11873234	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114904880 () rs orientation: forward

Symbol	Name	Function Class
Rr399844	regulatory region 399844	1215 bp downstream
Rr636877	regulatory region 636877	860 bp distal
Rr636878	regulatory region 636878	318 bp distal
Rr636879	regulatory region 636879	427 bp proximal
Rr636880	regulatory region 636880	710 bp proximal
Rr636881	regulatory region 636881	1617 bp proximal
Vgll4	vestigial like family member 4	Intron