rs31454824 SNP Detail

Summary

• ID
  rs31454824
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114903187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGAGAA AGAATCAAAT
  TTCTTACTAG TGTGTGTCTC TCTGTCTAGT AGTGGGATGG AGAGTGGGGT GTCAGATGAC
  AACTCTGCCG CCTTTCCTTC CACTTTCCCC TGGCCCCTGG AGGTTGAATT TAGATTGGCA
  GGACACCTTG ACCTGAGCCA TAGGGGAAGG GATAGAGTCA AATTTCAAGT GGTCCTAAGT
  W
  TGGGCCAGGT AAATGTAAAT CGTCTGTCAA GTTCCTTCTA TAGCACGCCC TTCCAAGGAA
  AGACCCTAGC GTATCAGGCT ATTTCTGCGA TGTGGGATTG CTTAAACTGA CTCGTTTTAA
  AATGTACTCT GTCAAAAATG TTCCATAAAG TATATCATTG ACCTATGTCT TAATTTTTGT
  TCCCTGCAAA ACAGTACCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053494	NES11873258	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	A	A	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31454824					SNP	T	T	A	T	T	A	A	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053494	NES11873258	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114903187 () rs orientation: forward

Symbol	Name	Function Class
Rr399844	regulatory region 399844	177 bp upstream
Rr636877	regulatory region 636877	193 bp proximal
Rr636878	regulatory region 636878	1354 bp proximal
Vgll4	vestigial like family member 4	Intron